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Performance advice requested for Percona 5.6 w/Tokudb application

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  • Performance advice requested for Percona 5.6 w/Tokudb application

    At my company, we have been deploying Percona 5.6.36-rel82.1 on Centos servers as the data backend for our Java application.

    Oddly, on one of our sites the performance is much lower than the others, and we are at a loss for figuring out why.
    The database server at this site is a Centos 7.6 Dell PowerEdge R740xd, with a H740P RAID controller and a 7 x 1.92TB SSD RAID5, with 1.5TB of 2666Mhz DDR4 , connected via 10Gbit ethernet to a server running the java application.

    The my.cnf for this server is currently:

    [mysql]
    max_allowed_packet = 10M

    [mysqld]
    datadir = /export/ssdraid/mysql
    socket = /export/ssdraid/mysql/mysql.sock
    max_connections = 10000
    key_buffer = 1M
    max_allowed_packet = 10M
    myisam_sort_buffer_size = 64M
    query_cache_size = 16M
    innodb_buffer_pool_instances = 16
    innodb_buffer_pool_size = 640G
    tokudb_cache_size = 640G
    net_write_timeout = 120
    net_read_timeout = 120
    connect_timeout = 120
    innodb_lock_wait_timeout = 120
    thread_pool_idle_timeout = 120
    innodb_additional_mem_pool_size = 20M
    innodb_checksums = 0
    innodb_log_file_size = 2000M
    innodb_log_buffer_size = 1024M
    innodb_flush_log_at_trx_commit = 0
    performance_schema = OFF
    innodb_read_ahead_threshold = 32
    innodb_file_format = Barracuda
    bulk_insert_buffer_size = 16M
    innodb_file_per_table
    transaction-isolation = READ-UNCOMMITTED
    secure-file-priv = ""
    tmpdir = /export/ssdraid/tmp
    symbolic-links = 1

    [mysqld_safe]
    thp-setting=never
    log-error = /var/log/mysqld.log
    pid-file = /var/run/mysqld/mysqld.pid

    When I examine the server during the slow jobs, I see that it is fairly busy. About 1.1GB/sec SSD reads/ 50MB/sec SSD writes, about 1000% CPU showing in 'top' for the mysqld process.

    The database is a mixture of InnoDB and TokuDB tables.

    Any advice on tuning this?

    Also, we are willing to contract with Percona to provide paid optimization consulting for this problem. Who do we contact about this?
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